Dengue: New lineage nomenclature for genomic surveillance
Content Editor: Dr. Gurumurthy
June 7, 2024 at 12:30:00 PM
Dengue, Genomic classification, Vector borne diseases

A proposal was recently made to add major and minor lineages to classify DENV, addressing the challenges posed by its genomic diversity.
These lineages, based on phylogenetic thresholds, remain stable across studies.
They offer a useful framework for discussing DENV diversity at regional and national levels, even when using partial genome sequences.
This standardized approach aids in identifying and tracking lineages of epidemiological or clinical significance.
The new genotype definitions successfully decrease unassigned DENV sequences.
Major lineages, labeled with Roman alphabet letters, address regional-scale questions, while minor lineages, indicated by numbers and full stops, provide finer granularity, similar to SARS-CoV-2 pango lineages. Ex. DENV-2 genotype II is widespread across DENV-affected regions.
The major lineage DENV-2II_A is mainly found in the eastern hemisphere.
Among minor lineages, 2II_A.2.1 occurs in India and Kenya, while 2II_A.2.2 has a broader distribution in South and East Asia.
Detecting these lineages can provide insights into potential introductions or local occurrences.
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